Report json file¶
A json file will be generated in the output folder.
This json contain the following information. You can verify if all subjects were processed, and which one were excluded.
{
"halfpipe_unprocessed": {
"total_subjects": 2,
"processed_subjects": 2,
"unprocessed_subjects": 0,
"unprocessed_subject_list": []
},
"Total subjects before FD rejection": 2,
"N Subjects with mean FD>0.5": 0,
"Subjects with mean FD>0.5": [],
"Selected sample based on group variable": "diagnosis",
"cases 1": "n=1",
"controls 0": "n=1",
"original sample": "n=2",
"new sample": "n=2",
"data points available": "10",
"standardized estimators are based on diagnosis": "0"
}TSV files¶
3 tsv files are generated
- beta maps
- qvalues maps
- Summary of beta & qvalues